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  • Introduction to basic concepts of MasPy
  • maspy package
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  • Welcome to maspy’s documentation!
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Welcome to maspy’s documentation!¶

Contents:

  • Introduction to basic concepts of MasPy
    • MS spectra in MasPy
      • The mzML file format
      • MsrunContainer
      • Run metadata (Rm)
      • Spectrum array item (Sai), spectrum metadata item (Smi)
      • Chromatogram item (Ci)
      • Spectrum item (Si)
      • MsrunContainer.info
      • MasPy file formats
      • Basic code examples
        • Importing an mzML file
        • Saving an MsrunContainer to the hard disk
        • Loading an MsrunContainer from the hard disk
        • Deleting data from an MsrunContainer
        • Exporting specfiles from MsrunContainer to mzML files
        • Accessing data from an MsrunContainer
    • Spectrum identifications in MasPy
      • The mzIdentML file format
      • Representation of spectrum identifications in MasPy
      • The spectrum identification item container (SiiContainer)
      • Basic code examples
      • Depricated - work in progress
    • Peptide LC-MS features in MasPy
      • Representation of LC-MS features in MasPy
      • Supported feature detection algorithms
      • Basic code examples
    • Fasta files in MasPy
      • The FASTA file format
      • Protein database in MasPy
      • Basic code examples
      • Depricated
  • maspy package
    • Submodules
    • maspy.auxiliary module
    • maspy.constants module
    • maspy.core module
    • maspy.errors module
    • maspy.featuremethods module
    • maspy.inference module
      • Relevant terms from the PSI-MS ontology
      • Additional terms used in maspy
    • maspy.isobar module
    • maspy.mit_stats module
    • maspy.peptidemethods module
    • maspy.proteindb module
    • maspy.reader module
    • maspy.writer module
    • maspy.sil module
    • maspy.xml module
    • Module contents

Indices and tables¶

  • Index
  • Module Index
  • Search Page
Next

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